Introduction As most readers of this blog will know, bioinformatics has always been a data-heavy field of research. Many computational problems within bioinformatics can scale up to the sky, from protein folding to calculating homology in sequences. But the real motherload of repetitive data was unleashed on the bioinformatics community when Next Generation Sequencing (NGS) […]
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When Seven Bridges was conceived, a bioinformatics framework with this in mind didn’t exist yet. So, as those things go, the developers at Seven Bridges made their own language, Rabix, which they release as a beta to the public in 2017.
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Recently I visited the DTL Programmers Meeting, where I had a discussion with members of the SASC bioinformatics development group. For them, bioinformatics pipelines are more about scalibilty and manageablity, not about user-friendliness or readability. They opted for Cromwell, a framework language maintained by the Broad Institute.
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In order to provide a more flexible availabilty for consultancy and research, and to cater to a more international customer base, BioCentric is also available on Upwork.
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One of the biggest changes within the field of bioinformatics is the rise of the framework. In part four, I will focus on Nextflow, the framework build for scaling.
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To help facilitate bioinformatics research and development of our customers, we have expended our bioinformatics services.
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