When Seven Bridges was conceived, a bioinformatics framework with this in mind didn’t exist yet. So, as those things go, the developers at Seven Bridges made their own language, Rabix, which they release as a beta to the public in 2017.
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Recently I visited the DTL Programmers Meeting, where I had a discussion with members of the SASC bioinformatics development group. For them, bioinformatics pipelines are more about scalibilty and manageablity, not about user-friendliness or readability. They opted for Cromwell, a framework language maintained by the Broad Institute.
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In order to provide a more flexible availabilty for consultancy and research, and to cater to a more international customer base, BioCentric is also available on Upwork.
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One of the biggest changes within the field of bioinformatics is the rise of the framework. In part four, I will focus on Nextflow, the framework build for scaling.
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To help facilitate bioinformatics research and development of our customers, we have expended our bioinformatics services.
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The ELIXIR Europe node in the Netherlands provides an infrastructure and framework for managing the vast amount of data that is being generated by bioinformatics and life sciences. 5 and 6 April there will be a training course to help implement this framework for organisations and companies within the Netherlands who want to use, reuse […]
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