NVIDIA’s Clara Parabricks v4.0, presented during Nvidia’s GTC 2022, introduces a couple of groundbreaking updates that democratize access to accelerated genome sequencing analysis. The v4.0 release features expanded compatibility with workflow languages like WDL and NextFlow, enabling seamless integration with GPU-accelerated and third-party tools. Additionally, it supports the Cromwell workflow management system, making it easy […]
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When Seven Bridges was conceived, a bioinformatics framework with this in mind didn’t exist yet. So, as those things go, the developers at Seven Bridges made their own language, Rabix, which they release as a beta to the public in 2017.
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One of the biggest changes within the field of bioinformatics is the rise of the framework. In part four, I will focus on Nextflow, the framework build for scaling.
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One of the biggest changes within the field of bioinformatics is the rise of the framework. Frameworks are the professionalization of analysis pipelines, constructed with software development and data science in mind. With this series of blogs I will discuss a few that have crossed my path, and try to explain the essence of their design philosophy. In part two, I will focus on BioConda and BioContainers: the hassle-free application management.
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