Tag Archives: WDL

nvidia parabricks

NVIDIA Parabricks version 4.0 free for R&D

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NVIDIA’s Clara Parabricks v4.0, presented during Nvidia’s GTC 2022, introduces a couple of groundbreaking updates that democratize access to accelerated genome sequencing analysis. The v4.0 release features expanded compatibility with workflow languages like WDL and NextFlow, enabling seamless integration with GPU-accelerated and third-party tools. Additionally, it supports the Cromwell workflow management system, making it easy […]

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Bioinformatics Frameworks Part 5: Cromwell and WDL

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Recently I visited the DTL Programmers Meeting, where I had a discussion with members of the SASC bioinformatics development group. For them, bioinformatics pipelines are more about scalibilty and manageablity, not about user-friendliness or readability. They opted for Cromwell, a framework language maintained by the Broad Institute.

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